IL_5OT7_167

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

5OT7|1|4|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OT7_167 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.1521

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5OT7|1|4|G|2737
5OT7|1|4|A|2738
5OT7|1|4|U|2739
5OT7|1|4|A|2740
5OT7|1|4|A|2741
5OT7|1|4|C|2742
*
5OT7|1|4|G|2762
5OT7|1|4|G|2763
5OT7|1|4|A|2764
5OT7|1|4|A|2765
5OT7|1|4|G|2766
5OT7|1|4|C|2767

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L36

Chain k

50S ribosomal protein L6

Chain o

50S ribosomal protein L13