IL_5OT7_182

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGC*GACC

Length

7 nucleotides

Bulged bases

5OT7|1|4|A|443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OT7_182 not in the Motif Atlas

Geometric match to IL_8C3A_149

Geometric discrepancy: 0.1892

The information below is about IL_8C3A_149

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

5OT7|1|4|G|35
5OT7|1|4|G|36
5OT7|1|4|C|37
*
5OT7|1|4|G|442
5OT7|1|4|A|443
5OT7|1|4|C|444
5OT7|1|4|C|445

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain i

50S ribosomal protein L4

Chain v

50S ribosomal protein L20