IL_5OT7_190

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

5OT7|1|4|C|2111, 5OT7|1|4|G|2112, 5OT7|1|4|U|2118

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OT7_190 not in the Motif Atlas

Geometric match to IL_8C3A_142

Geometric discrepancy: 0.2225

The information below is about IL_8C3A_142

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

5OT7|1|4|G|2110
5OT7|1|4|C|2111
5OT7|1|4|G|2112
5OT7|1|4|U|2113
5OT7|1|4|A|2114
5OT7|1|4|G|2115
5OT7|1|4|G|2116
5OT7|1|4|A|2117
5OT7|1|4|U|2118
5OT7|1|4|A|2119
5OT7|1|4|G|2120
*
5OT7|1|4|C|2178
5OT7|1|4|C|2179

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain f

50S ribosomal protein L1