IL_5T2A_002

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCAAG*CGAAAA

Length

11 nucleotides

Bulged bases

5T2A|1|2|A|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_002 not in the Motif Atlas

Homologous match to IL_4V88_386

Geometric discrepancy: 0.2391

The information below is about IL_4V88_386

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

5T2A|1|2|U|37
5T2A|1|2|C|38
5T2A|1|2|A|39
5T2A|1|2|A|40
5T2A|1|2|G|41
*
5T2A|1|2|C|514
5T2A|1|2|G|515
5T2A|1|2|A|516
5T2A|1|2|A|517
5T2A|1|2|A|518
5T2A|1|2|A|519

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

eS4

Chain 6

uS4