IL_5T2A_011

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5T2A|1|2|U|175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_011 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1247

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

5T2A|1|2|G|148
5T2A|1|2|G|149
5T2A|1|2|A|150
5T2A|1|2|U|151
5T2A|1|2|A|152
5T2A|1|2|A|153
5T2A|1|2|C|154
*
5T2A|1|2|G|170
5T2A|1|2|C|171
5T2A|1|2|U|172
5T2A|1|2|A|173
5T2A|1|2|A|174
5T2A|1|2|U|175
5T2A|1|2|A|176
5T2A|1|2|C|177

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 3

eS6

Chain AT

eS24