IL_5T2A_032

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AC*GGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_032 not in the Motif Atlas

Homologous match to IL_4V88_423

Geometric discrepancy: 0.2049

The information below is about IL_4V88_423

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

5T2A|1|2|A|847
5T2A|1|2|C|848
*
5T2A|1|2|G|903
5T2A|1|2|G|904
5T2A|1|2|A|905
5T2A|1|2|U|906

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 4

eS7

Chain AE

uS17

Chain AJ

uS8

Chain AS

uS12