IL_5T2A_033

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACUAAAGA*UAGAAAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_033 not in the Motif Atlas

Homologous match to IL_4V88_425

Geometric discrepancy: 0.2508

The information below is about IL_4V88_425

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53064.1

Basepair signature

cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

5T2A|1|2|G|852
5T2A|1|2|A|853
5T2A|1|2|C|854
5T2A|1|2|U|855
5T2A|1|2|A|856
5T2A|1|2|A|857
5T2A|1|2|A|858
5T2A|1|2|G|859
5T2A|1|2|A|860
*
5T2A|1|2|U|892
5T2A|1|2|A|893
5T2A|1|2|G|894
5T2A|1|2|A|895
5T2A|1|2|A|896
5T2A|1|2|A|897
5T2A|1|2|G|898
5T2A|1|2|C|899

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

eS4

Chain 6

uS4

Chain AE

uS17

Chain AJ

uS8