IL_5T2A_034

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUCUA*UAUUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_034 not in the Motif Atlas

Geometric match to IL_4V88_422

Geometric discrepancy: 0.2825

The information below is about IL_4V88_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

5T2A|1|2|C|921
5T2A|1|2|U|922
5T2A|1|2|C|923
5T2A|1|2|U|924
5T2A|1|2|A|925
*
5T2A|1|2|U|961
5T2A|1|2|A|962
5T2A|1|2|U|963
5T2A|1|2|U|964
5T2A|1|2|G|965

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 4

eS7

Chain R

eL19