IL_5T2A_036

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAG*UCCUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_036 not in the Motif Atlas

Geometric match to IL_5J7L_332

Geometric discrepancy: 0.385

The information below is about IL_5J7L_332

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

5T2A|1|2|G|1111
5T2A|1|2|A|1112
5T2A|1|2|G|1113
*
5T2A|1|2|U|1208
5T2A|1|2|C|1209
5T2A|1|2|C|1210
5T2A|1|2|U|1211
5T2A|1|2|C|1212

Current chains

Chain 2

18S rRNA

Nearby chains

Chain AG

uS15

Chain AJ

uS8

Chain AW

eS27