IL_5T2A_042

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUCAG*CUUAGACC

Length

13 nucleotides

Bulged bases

5T2A|1|2|A|1160

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_042 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1497

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

5T2A|1|2|G|1142
5T2A|1|2|U|1143
5T2A|1|2|C|1144
5T2A|1|2|A|1145
5T2A|1|2|G|1146
*
5T2A|1|2|C|1157
5T2A|1|2|U|1158
5T2A|1|2|U|1159
5T2A|1|2|A|1160
5T2A|1|2|G|1161
5T2A|1|2|A|1162
5T2A|1|2|C|1163
5T2A|1|2|C|1164

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 0

eS1

Chain AH

uS11

Chain B

Large subunit ribosomal RNA; LSU rRNA