IL_5T2A_045
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAC*GUUACAG
- Length
- 10 nucleotides
- Bulged bases
- 5T2A|1|2|U|1450, 5T2A|1|2|A|1452, 5T2A|1|2|A|1454
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_045 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.1301
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5T2A|1|2|C|1281
5T2A|1|2|A|1282
5T2A|1|2|C|1283
*
5T2A|1|2|G|1449
5T2A|1|2|U|1450
5T2A|1|2|U|1451
5T2A|1|2|A|1452
5T2A|1|2|C|1453
5T2A|1|2|A|1454
5T2A|1|2|G|1455
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain AE
- uS17
- Chain AG
- uS15
- Chain AJ
- uS8
- Chain AP
- uS5
- Chain AS
- uS12
- Chain AW
- eS27
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