IL_5T2A_047

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_047 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1017

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

5T2A|1|2|G|1465
5T2A|1|2|G|1466
5T2A|1|2|A|1467
5T2A|1|2|G|1468
5T2A|1|2|U|1469
5T2A|1|2|A|1470
5T2A|1|2|C|1471
5T2A|1|2|G|1472
*
5T2A|1|2|U|1483
5T2A|1|2|G|1484
5T2A|1|2|A|1485
5T2A|1|2|A|1486
5T2A|1|2|A|1487
5T2A|1|2|C|1488

Current chains

Chain 2

18S rRNA

Nearby chains

Chain AS

uS12

Chain B

Large subunit ribosomal RNA; LSU rRNA