IL_5T2A_056
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUG*CAA
- Length
- 7 nucleotides
- Bulged bases
- 5T2A|1|2|U|1796
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_056 not in the Motif Atlas
- Geometric match to IL_3LA5_001
- Geometric discrepancy: 0.2339
- The information below is about IL_3LA5_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_86319.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 269
Unit IDs
5T2A|1|2|U|1794
5T2A|1|2|U|1795
5T2A|1|2|U|1796
5T2A|1|2|G|1797
*
5T2A|1|2|C|1806
5T2A|1|2|A|1807
5T2A|1|2|A|1808
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 7
- RACK1
- Chain AL
- eS17
- Chain AN
- uS7
- Chain AZ
- eS28
Coloring options: