IL_5T2A_060

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGU*AAAG

Length

7 nucleotides

Bulged bases

5T2A|1|2|A|2159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_060 not in the Motif Atlas

Geometric match to IL_5J7L_009

Geometric discrepancy: 0.2122

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

5T2A|1|2|C|2060
5T2A|1|2|G|2061
5T2A|1|2|U|2062
*
5T2A|1|2|A|2157
5T2A|1|2|A|2158
5T2A|1|2|A|2159
5T2A|1|2|G|2160

Current chains

Chain 2

18S rRNA

Nearby chains

Chain AS

uS12

Chain B

Large subunit ribosomal RNA; LSU rRNA