IL_5T2A_061

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_061 not in the Motif Atlas

Homologous match to IL_4V88_468

Geometric discrepancy: 0.0925

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

5T2A|1|2|C|2069
5T2A|1|2|G|2070
5T2A|1|2|A|2071
5T2A|1|2|U|2072
*
5T2A|1|2|A|2147
5T2A|1|2|G|2148
5T2A|1|2|A|2149
5T2A|1|2|G|2150

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain U

uL14