IL_5T2A_062

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAU*AAUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_062 not in the Motif Atlas

Geometric match to IL_4EYA_010

Geometric discrepancy: 0.3654

The information below is about IL_4EYA_010

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5T2A|1|2|U|2072
5T2A|1|2|G|2073
5T2A|1|2|A|2074
5T2A|1|2|U|2075
*
5T2A|1|2|A|2144
5T2A|1|2|A|2145
5T2A|1|2|U|2146
5T2A|1|2|A|2147

Current chains

Chain 2

18S rRNA

Nearby chains

Chain AS

uS12

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain U

uL14