IL_5T2A_066
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUC*GUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_066 not in the Motif Atlas
- Geometric match to IL_4P3U_006
- Geometric discrepancy: 0.1209
- The information below is about IL_4P3U_006
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_71625.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 79
Unit IDs
5T2A|1|2|A|2091
5T2A|1|2|U|2092
5T2A|1|2|C|2093
*
5T2A|1|2|G|2126
5T2A|1|2|U|2127
5T2A|1|2|U|2128
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 3
- eS6
- Chain 5
- eS8
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain W
- eL24
Coloring options: