IL_5T2A_067

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGAC*GAAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_067 not in the Motif Atlas

Geometric match to IL_7RQB_075

Geometric discrepancy: 0.1204

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

5T2A|1|2|C|2093
5T2A|1|2|G|2094
5T2A|1|2|G|2095
5T2A|1|2|A|2096
5T2A|1|2|C|2097
*
5T2A|1|2|G|2122
5T2A|1|2|A|2123
5T2A|1|2|A|2124
5T2A|1|2|A|2125
5T2A|1|2|G|2126

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 3

eS6

Chain 5

eS8

Chain W

eL24