IL_5T2A_075
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAGU*GCCCC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_075 not in the Motif Atlas
- Geometric match to IL_5TBW_121
- Geometric discrepancy: 0.2837
- The information below is about IL_5TBW_121
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
5T2A|1|A|G|468
5T2A|1|A|A|469
5T2A|1|A|A|470
5T2A|1|A|G|471
5T2A|1|A|U|472
*
5T2A|1|A|G|661
5T2A|1|A|C|662
5T2A|1|A|C|663
5T2A|1|A|C|664
5T2A|1|A|C|665
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain M
- uL13
- Chain g
- eL32
- Chain j
- eL33
Coloring options: