IL_5T2A_079

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AG*UCUU

Length

6 nucleotides

Bulged bases

5T2A|1|A|C|563, 5T2A|1|A|U|564

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_079 not in the Motif Atlas

Geometric match to IL_5WLH_001

Geometric discrepancy: 0.1647

The information below is about IL_5WLH_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

5T2A|1|A|A|497
5T2A|1|A|G|498
*
5T2A|1|A|U|562
5T2A|1|A|C|563
5T2A|1|A|U|564
5T2A|1|A|U|565

Current chains

Chain A

LSU-alpha

Nearby chains

Chain g

eL32

Chain j

eL33

Chain p

uL4