IL_5T2A_103
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCAAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 5T2A|1|A|A|1052
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_103 not in the Motif Atlas
- Homologous match to IL_5TBW_040
- Geometric discrepancy: 0.1038
- The information below is about IL_5TBW_040
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
5T2A|1|A|G|1050
5T2A|1|A|C|1051
5T2A|1|A|A|1052
5T2A|1|A|A|1053
5T2A|1|A|A|1054
5T2A|1|A|U|1055
*
5T2A|1|A|A|1097
5T2A|1|A|A|1098
5T2A|1|A|A|1099
5T2A|1|A|C|1100
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- 5S ribosomal RNA; 5S rRNA
- Chain J
- uL16
- Chain S
- eL21
- Chain s
- uL18
Coloring options: