IL_5T2A_107

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUAG*CAAG

Length

9 nucleotides

Bulged bases

5T2A|1|A|A|1128

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_107 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.3109

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5T2A|1|A|C|1125
5T2A|1|A|U|1126
5T2A|1|A|U|1127
5T2A|1|A|A|1128
5T2A|1|A|G|1129
*
5T2A|1|A|C|1137
5T2A|1|A|A|1138
5T2A|1|A|A|1139
5T2A|1|A|G|1140

Current chains

Chain A

LSU-alpha

Nearby chains

Chain S

eL21

Chain b

eL29

Chain s

uL18