IL_5T2A_115
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAUACGUGAAAAG*CGAAAAUGGAUGACGC
- Length
- 29 nucleotides
- Bulged bases
- 5T2A|1|A|U|1257, 5T2A|1|A|U|1261, 5T2A|1|A|A|1364
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_115 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.2087
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5T2A|1|A|G|1255
5T2A|1|A|A|1256
5T2A|1|A|U|1257
5T2A|1|A|A|1258
5T2A|1|A|C|1259
5T2A|1|A|G|1260
5T2A|1|A|U|1261
5T2A|1|A|G|1262
5T2A|1|A|A|1263
5T2A|1|A|A|1264
5T2A|1|A|A|1265
5T2A|1|A|A|1266
5T2A|1|A|G|1267
*
5T2A|1|A|C|1361
5T2A|1|A|G|1362
5T2A|1|A|A|1363
5T2A|1|A|A|1364
5T2A|1|A|A|1365
5T2A|1|A|A|1366
5T2A|1|A|U|1367
5T2A|1|A|G|1368
5T2A|1|A|G|1369
5T2A|1|A|A|1370
5T2A|1|A|U|1371
5T2A|1|A|G|1372
5T2A|1|A|A|1373
5T2A|1|A|C|1374
5T2A|1|A|G|1375
5T2A|1|A|C|1376
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- 5S ribosomal RNA; 5S rRNA
- Chain J
- uL16
- Chain M
- uL13
- Chain Q
- eL20
- Chain d
- uL3
- Chain j
- eL33
- Chain q
- eL40
- Chain u
- uL30
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