IL_5T2A_121
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGACGAAG*UGGAC
- Length
- 13 nucleotides
- Bulged bases
- 5T2A|1|A|C|1482
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_121 not in the Motif Atlas
- Geometric match to IL_7RQB_047
- Geometric discrepancy: 0.1078
- The information below is about IL_7RQB_047
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.2
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 28
Unit IDs
5T2A|1|A|G|1479
5T2A|1|A|G|1480
5T2A|1|A|A|1481
5T2A|1|A|C|1482
5T2A|1|A|G|1483
5T2A|1|A|A|1484
5T2A|1|A|A|1485
5T2A|1|A|G|1486
*
5T2A|1|A|U|1507
5T2A|1|A|G|1508
5T2A|1|A|G|1509
5T2A|1|A|A|1510
5T2A|1|A|C|1511
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- Large subunit ribosomal RNA; LSU rRNA
- Chain X
- uL24
- Chain g
- eL32
- Chain p
- uL4
Coloring options: