IL_5T2A_128
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGAAG*CUGAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_128 not in the Motif Atlas
- Geometric match to IL_7A0S_087
- Geometric discrepancy: 0.2112
- The information below is about IL_7A0S_087
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
5T2A|1|A|U|1674
5T2A|1|A|G|1675
5T2A|1|A|A|1676
5T2A|1|A|A|1677
5T2A|1|A|G|1678
*
5T2A|1|A|C|1726
5T2A|1|A|U|1727
5T2A|1|A|G|1728
5T2A|1|A|A|1729
5T2A|1|A|A|1730
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain E
- srRNA1
- Chain V
- uL23
- Chain c
- uL2
- Chain v
- eL8
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