IL_5T2A_135
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGUCGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 5T2A|1|B|G|518
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_135 not in the Motif Atlas
- Homologous match to IL_8C3A_083
- Geometric discrepancy: 0.1024
- The information below is about IL_8C3A_083
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_06455.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
5T2A|1|B|A|84
5T2A|1|B|G|85
5T2A|1|B|U|86
5T2A|1|B|C|87
5T2A|1|B|G|88
5T2A|1|B|G|89
*
5T2A|1|B|C|516
5T2A|1|B|U|517
5T2A|1|B|G|518
5T2A|1|B|U|519
Current chains
- Chain B
- LSU-beta
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain G
- Large subunit ribosomal RNA; LSU rRNA
- Chain U
- uL14
- Chain d
- uL3
Coloring options: