IL_5T2A_136

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUAAG*CAAGAAG

Length

13 nucleotides

Bulged bases

5T2A|1|B|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_136 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.1026

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5T2A|1|B|C|101
5T2A|1|B|G|102
5T2A|1|B|U|103
5T2A|1|B|A|104
5T2A|1|B|A|105
5T2A|1|B|G|106
*
5T2A|1|B|C|111
5T2A|1|B|A|112
5T2A|1|B|A|113
5T2A|1|B|G|114
5T2A|1|B|A|115
5T2A|1|B|A|116
5T2A|1|B|G|117

Current chains

Chain B

LSU-beta

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain m

eL43