IL_5T2A_140
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGAUGC*GUAUAUCG
- Length
- 14 nucleotides
- Bulged bases
- 5T2A|1|B|U|342, 5T2A|1|B|A|358, 5T2A|1|B|C|362
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_140 not in the Motif Atlas
- Homologous match to IL_5TBW_083
- Geometric discrepancy: 0.1786
- The information below is about IL_5TBW_083
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5T2A|1|B|U|339
5T2A|1|B|G|340
5T2A|1|B|A|341
5T2A|1|B|U|342
5T2A|1|B|G|343
5T2A|1|B|C|344
*
5T2A|1|B|G|356
5T2A|1|B|U|357
5T2A|1|B|A|358
5T2A|1|B|U|359
5T2A|1|B|A|360
5T2A|1|B|U|361
5T2A|1|B|C|362
5T2A|1|B|G|363
Current chains
- Chain B
- LSU-beta
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain E
- srRNA1
- Chain c
- uL2
- Chain m
- eL43
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