IL_5T2A_145
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UCAACG*CCGACG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_145 not in the Motif Atlas
- Geometric match to IL_4V9F_057
- Geometric discrepancy: 0.3263
- The information below is about IL_4V9F_057
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34822.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
5T2A|1|B|U|394
5T2A|1|B|C|395
5T2A|1|B|A|396
5T2A|1|B|A|397
5T2A|1|B|C|398
5T2A|1|B|G|399
*
5T2A|1|B|C|412
5T2A|1|B|C|413
5T2A|1|B|G|414
5T2A|1|B|A|415
5T2A|1|B|C|416
5T2A|1|B|G|417
Current chains
- Chain B
- LSU-beta
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain c
- uL2
- Chain k
- eL36
Coloring options: