IL_5T2A_147

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

5T2A|1|B|A|464, 5T2A|1|B|C|470, 5T2A|1|B|C|489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_147 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.0805

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

5T2A|1|B|C|460
5T2A|1|B|C|461
5T2A|1|B|A|462
5T2A|1|B|A|463
5T2A|1|B|A|464
5T2A|1|B|U|465
5T2A|1|B|G|466
5T2A|1|B|C|467
5T2A|1|B|C|468
5T2A|1|B|U|469
5T2A|1|B|C|470
5T2A|1|B|G|471
*
5T2A|1|B|C|487
5T2A|1|B|G|488
5T2A|1|B|C|489
5T2A|1|B|G|490

Current chains

Chain B

LSU-beta

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA