IL_5T2A_167

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

5T2A|1|B|G|1319, 5T2A|1|B|A|1320

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_167 not in the Motif Atlas

Geometric match to IL_5TBW_108

Geometric discrepancy: 0.0779

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

5T2A|1|B|C|1253
5T2A|1|B|U|1254
5T2A|1|B|C|1255
*
5T2A|1|B|G|1317
5T2A|1|B|U|1318
5T2A|1|B|G|1319
5T2A|1|B|A|1320
5T2A|1|B|G|1321

Current chains

Chain B

LSU-beta

Nearby chains

Chain U

uL14

Chain d

uL3