IL_5T2A_181
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUUAGUAC*GGAACCC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_181 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.284
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5T2A|1|D|G|72
5T2A|1|D|U|73
5T2A|1|D|U|74
5T2A|1|D|A|75
5T2A|1|D|G|76
5T2A|1|D|U|77
5T2A|1|D|A|78
5T2A|1|D|C|79
*
5T2A|1|D|G|99
5T2A|1|D|G|100
5T2A|1|D|A|101
5T2A|1|D|A|102
5T2A|1|D|C|103
5T2A|1|D|C|104
5T2A|1|D|C|105
Current chains
- Chain D
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain J
- uL16
- Chain Q
- eL20
- Chain S
- eL21
- Chain s
- uL18
- Chain u
- uL30
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