IL_5T2A_182
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGUC*GAC
- Length
- 7 nucleotides
- Bulged bases
- 5T2A|1|D|U|85
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_182 not in the Motif Atlas
- Homologous match to IL_5TBW_378
- Geometric discrepancy: 0.235
- The information below is about IL_5TBW_378
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
5T2A|1|D|G|83
5T2A|1|D|G|84
5T2A|1|D|U|85
5T2A|1|D|C|86
*
5T2A|1|D|G|93
5T2A|1|D|A|94
5T2A|1|D|C|95
Current chains
- Chain D
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain J
- uL16
- Chain Q
- eL20
- Chain S
- eL21
- Chain u
- uL30
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