IL_5T2A_183
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUGC*GG
- Length
- 6 nucleotides
- Bulged bases
- 5T2A|1|E|U|21
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_183 not in the Motif Atlas
- Geometric match to IL_4LFB_045
- Geometric discrepancy: 0.2093
- The information below is about IL_4LFB_045
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_24264.1
- Basepair signature
- cWW-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
5T2A|1|E|U|20
5T2A|1|E|U|21
5T2A|1|E|G|22
5T2A|1|E|C|23
*
5T2A|1|E|G|208
5T2A|1|E|G|209
Current chains
- Chain E
- srRNA1
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain Y
- eL27
- Chain c
- uL2
- Chain h
- eL34
Coloring options: