IL_5T2A_184
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AAUCC*GUUCU
- Length
- 10 nucleotides
- Bulged bases
- 5T2A|1|E|U|184
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_184 not in the Motif Atlas
- Geometric match to IL_2R8S_006
- Geometric discrepancy: 0.3432
- The information below is about IL_2R8S_006
- Detailed Annotation
- UAA/GAN variation
- Broad Annotation
- UAA/GAN variation
- Motif group
- IL_45790.2
- Basepair signature
- cWW-tSH-L-tHS-cWW
- Number of instances in this motif group
- 12
Unit IDs
5T2A|1|E|A|37
5T2A|1|E|A|38
5T2A|1|E|U|39
5T2A|1|E|C|40
5T2A|1|E|C|41
*
5T2A|1|E|G|182
5T2A|1|E|U|183
5T2A|1|E|U|184
5T2A|1|E|C|185
5T2A|1|E|U|186
Current chains
- Chain E
- srRNA1
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain R
- eL19
- Chain h
- eL34
Coloring options: