IL_5T2A_189

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

5T2A|1|G|A|174

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_189 not in the Motif Atlas

Geometric match to IL_2VPL_002

Geometric discrepancy: 0.2758

The information below is about IL_2VPL_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

5T2A|1|G|C|30
5T2A|1|G|G|31
*
5T2A|1|G|C|173
5T2A|1|G|A|174
5T2A|1|G|G|175

Current chains

Chain G

srRNA2

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain H

srRNA4

Chain M

uL13

Chain d

uL3