IL_5T2A_192
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCUCU*AUCG
- Length
- 9 nucleotides
- Bulged bases
- 5T2A|1|G|U|120
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_192 not in the Motif Atlas
- Geometric match to IL_7RQB_104
- Geometric discrepancy: 0.133
- The information below is about IL_7RQB_104
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.6
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 14
Unit IDs
5T2A|1|G|C|75
5T2A|1|G|C|76
5T2A|1|G|U|77
5T2A|1|G|C|78
5T2A|1|G|U|79
*
5T2A|1|G|A|119
5T2A|1|G|U|120
5T2A|1|G|C|121
5T2A|1|G|G|122
Current chains
- Chain G
- srRNA2
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain H
- srRNA4
- Chain U
- uL14
- Chain W
- eL24
- Chain d
- uL3
Coloring options: