IL_5T2A_200

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_200 not in the Motif Atlas

Geometric match to IL_4WF9_055

Geometric discrepancy: 0.374

The information below is about IL_4WF9_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

5T2A|1|H|G|43
5T2A|1|H|G|44
5T2A|1|H|C|67
*
5T2A|1|H|G|88
5T2A|1|H|G|89
5T2A|1|H|C|90

Current chains

Chain H

srRNA4

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain G

Large subunit ribosomal RNA; LSU rRNA

Chain W

eL24