IL_5T2A_210

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

5T2A|1|2|C|1512, 5T2A|1|2|C|1513

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_210 not in the Motif Atlas

Homologous match to IL_8P9A_431

Geometric discrepancy: 0.1483

The information below is about IL_8P9A_431

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

5T2A|1|2|A|1511
5T2A|1|2|C|1512
5T2A|1|2|C|1513
5T2A|1|2|A|1514
*
5T2A|1|2|U|2033
5T2A|1|2|C|2034
5T2A|1|2|C|2035
5T2A|1|2|C|2036
5T2A|1|2|U|2037

Current chains

Chain 2

18S rRNA

Nearby chains

Chain AK

uS9

Chain AN

uS7

Chain AZ

eS28