IL_5T2A_212
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 5T2A|1|2|C|1628
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_212 not in the Motif Atlas
- Homologous match to IL_8P9A_438
- Geometric discrepancy: 0.1672
- The information below is about IL_8P9A_438
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82453.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
5T2A|1|2|U|1626
5T2A|1|2|G|1627
5T2A|1|2|C|1628
5T2A|1|2|A|1629
5T2A|1|2|U|1630
*
5T2A|1|2|A|1839
5T2A|1|2|U|1840
5T2A|1|2|G|1841
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 8
- uS14
- Chain AD
- eS10
- Chain AQ
- uS10
- Chain AX
- uS3
Coloring options: