IL_5T2A_213
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 5T2A|1|2|U|1835, 5T2A|1|2|G|1838
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_213 not in the Motif Atlas
- Homologous match to IL_8P9A_440
- Geometric discrepancy: 0.2267
- The information below is about IL_8P9A_440
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34117.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
5T2A|1|2|U|1630
5T2A|1|2|G|1631
5T2A|1|2|G|1632
*
5T2A|1|2|U|1833
5T2A|1|2|C|1834
5T2A|1|2|U|1835
5T2A|1|2|G|1836
5T2A|1|2|U|1837
5T2A|1|2|G|1838
5T2A|1|2|A|1839
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 8
- uS14
- Chain AD
- eS10
- Chain AQ
- uS10
- Chain AX
- uS3
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