IL_5T2A_220
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUGAAG*UGGAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_220 not in the Motif Atlas
- Geometric match to IL_4LFB_055
- Geometric discrepancy: 0.1968
- The information below is about IL_4LFB_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_57885.2
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5T2A|1|A|C|445
5T2A|1|A|U|446
5T2A|1|A|G|447
5T2A|1|A|A|448
5T2A|1|A|A|449
5T2A|1|A|G|450
*
5T2A|1|C|U|104
5T2A|1|C|G|105
5T2A|1|C|G|106
5T2A|1|C|A|107
5T2A|1|C|U|108
5T2A|1|C|G|109
Current chains
- Chain A
- LSU-alpha
- Chain C
- 5.8S rRNA
Nearby chains
- Chain P
- uL22
- Chain g
- eL32
- Chain p
- uL4
Coloring options: