IL_5T2A_229
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUACU*AAGAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_229 not in the Motif Atlas
- Geometric match to IL_4LFB_065
- Geometric discrepancy: 0.1992
- The information below is about IL_4LFB_065
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
5T2A|1|2|G|1132
5T2A|1|2|U|1133
5T2A|1|2|A|1134
5T2A|1|2|C|1135
5T2A|1|2|U|1136
*
5T2A|1|2|A|1170
5T2A|1|2|A|1171
5T2A|1|2|G|1172
5T2A|1|2|A|1173
5T2A|1|2|C|1174
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 0
- eS1
- Chain AH
- uS11
- Chain AV
- eS26
- Chain c
- uL2
Coloring options: