IL_5T2A_239
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUGU*AACU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_239 not in the Motif Atlas
- Geometric match to IL_8P9A_419
- Geometric discrepancy: 0.1952
- The information below is about IL_8P9A_419
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
5T2A|1|A|A|1776
5T2A|1|A|U|1777
5T2A|1|A|G|1778
5T2A|1|A|U|1779
*
5T2A|1|B|A|4
5T2A|1|B|A|5
5T2A|1|B|C|6
5T2A|1|B|U|7
Current chains
- Chain A
- LSU-alpha
- Chain B
- LSU-beta
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain E
- srRNA1
- Chain h
- eL34
- Chain n
- eL38
Coloring options: