IL_5T2C_003
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAC*GCC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2C_003 not in the Motif Atlas
- Geometric match to IL_4J50_001
- Geometric discrepancy: 0.1919
- The information below is about IL_4J50_001
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- Isolated cWH basepair
- Motif group
- IL_10892.2
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 58
Unit IDs
5T2C|1|A|G|16
5T2C|1|A|A|17
5T2C|1|A|C|18
*
5T2C|1|C|G|139
5T2C|1|C|C|140
5T2C|1|C|C|141
Current chains
- Chain A
- 28S rRNA
- Chain C
- 5.8S rRNA
Nearby chains
- Chain R
- 60S ribosomal protein L23a
- Chain b
- 60S ribosomal protein L35
- Chain t
- 60S ribosomal protein L15
Coloring options: