IL_5T2C_007

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

5T2C|1|A|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_007 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.2533

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

5T2C|1|A|C|118
5T2C|1|A|G|119
5T2C|1|A|A|120
5T2C|1|A|A|121
*
5T2C|1|A|U|152
5T2C|1|A|G|153

Current chains

Chain A

28S rRNA

Nearby chains

Chain b

60S ribosomal protein L35

Chain n

60S ribosomal protein L7a

Chain t

60S ribosomal protein L15