IL_5T2C_039

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACCG*CGGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_039 not in the Motif Atlas

Geometric match to IL_1HYS_004

Geometric discrepancy: 0.393

The information below is about IL_1HYS_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

5T2C|1|A|A|1095
5T2C|1|A|C|1096
5T2C|1|A|C|1097
5T2C|1|A|G|1098
*
5T2C|1|A|C|1197
5T2C|1|A|G|1198
5T2C|1|A|G|1199
5T2C|1|A|G|1200
5T2C|1|A|U|1201

Current chains

Chain A

28S rRNA

Nearby chains

Chain M

60S ribosomal protein L18a

Chain N

60S ribosomal protein L21