IL_5T2C_042

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_042 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.2747

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5T2C|1|A|G|1425
5T2C|1|A|G|1426
5T2C|1|A|A|1427
5T2C|1|A|U|1428
5T2C|1|A|C|1429
*
5T2C|1|A|G|1455
5T2C|1|A|C|1456
5T2C|1|A|G|1457
5T2C|1|A|C|1458
5T2C|1|A|A|1459
5T2C|1|A|C|1460

Current chains

Chain A

28S rRNA

Nearby chains

Chain K

60S ribosomal protein L18

Chain V

60S ribosomal protein L29