IL_5T2C_047
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 5T2C|1|A|A|1650, 5T2C|1|A|G|1654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2C_047 not in the Motif Atlas
- Homologous match to IL_8C3A_030
- Geometric discrepancy: 0.1418
- The information below is about IL_8C3A_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
5T2C|1|A|G|1522
5T2C|1|A|A|1523
5T2C|1|A|A|1524
5T2C|1|A|A|1525
5T2C|1|A|G|1526
*
5T2C|1|A|C|1648
5T2C|1|A|U|1649
5T2C|1|A|A|1650
5T2C|1|A|G|1651
5T2C|1|A|U|1652
5T2C|1|A|A|1653
5T2C|1|A|G|1654
5T2C|1|A|C|1655
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain F
- 60S ribosomal protein L4
- Chain U
- 60S ribosomal protein L27a
- Chain d
- 60S ribosomal protein L37
- Chain r
- 60S ribosomal protein L13
- Chain t
- 60S ribosomal protein L15
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