IL_5T2C_049

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_049 not in the Motif Atlas

Homologous match to IL_8C3A_033

Geometric discrepancy: 0.1693

The information below is about IL_8C3A_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

5T2C|1|A|C|1551
5T2C|1|A|G|1552
5T2C|1|A|A|1553
5T2C|1|A|A|1554
5T2C|1|A|G|1555
*
5T2C|1|A|U|1572
5T2C|1|A|G|1573
5T2C|1|A|G|1574
5T2C|1|A|A|1575
5T2C|1|A|G|1576

Current chains

Chain A

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L8

Chain L

60S ribosomal protein L19

Chain j

60S ribosomal protein L37a